| config_files |
| R_libs/gridss |
| sig_plot |
| add_umi_tag_to_bam.py | 2.55 KB |
| add_umi_to_header.py | 3.72 KB |
| addbamstats.pl | 15.32 KB |
| addbamstats_ori.pl | 14.84 KB |
| addRepeatMasker.py | 2.07 KB |
| addSampleIDtoHeader.py | 448 B |
| afterqc_standardise_output.sh | 292 B |
| AppendTranscriptIndex.pl | 3.62 KB |
| bedpe_gridss2clove.sh | 669 B |
| chronQC_commands.sh | 5.74 KB |
| infer_sex.sh | 3.45 KB |
| jaffa_wrapper.sh | 639 B |
| merge_vcf_vep.pl | 14.07 KB |
| merge_vcf_vep.py | 17.10 KB |
| mp-vep-78.sh | 2.37 KB |
| mp-vep-90.sh | 2.82 KB |
| mp-vep-parallel.py | 5.05 KB |
| mp-vep.sh | 1.51 KB |
| mp_contra_column.sh | 455 B |
| multiqc_commands.sh | 14.06 KB |
| multiqc_config.CCP.yaml | 11.07 KB |
| multiqc_config.FRCP.yaml | 11.00 KB |
| multiqc_config.PHCP.yaml | 10.98 KB |
| multiqc_config.yaml | 11.07 KB |
| multiqc_transpose_stats.R | 485 B |
| Performance.pm | 21.33 KB |
| PerformanceHalo.pm | 21.11 KB |
| PerformanceSummary.pl | 1.12 KB |
| PerformanceSummary_HALO.pl | 1.13 KB |
| process-GRIDSS-output-single.R | 4.95 KB |
| process-GRIDSS-output.R | 6.42 KB |
| removeDuplicates.py | 11.65 KB |
| rna-diff_splicing.R | 3.57 KB |
| rna-seqc-summary.R | 491 B |
| rna-seqc-summary.sh | 240 B |
| Run_deconstructSig.R | 1.36 KB |
| run_HYSYS.sh | 5.73 KB |
| run_removeDup.sh | 403 B |
| sig_plot.R | 1.32 KB |
| snp_signature.sh | 1.08 KB |
| SortSam.sh | 71 B |
| Util.pm | 1.80 KB |
| variant_effect_predictor.pl | 103.59 KB |
| variant_effect_predictor_v73.pl | 113.55 KB |
| vcfExtractDP_AD.py | 5.39 KB |
| vcfGetAverageDP_AD.py | 3.23 KB |
| vcfReduceFormatInfo.py | 2.02 KB |
| vs2vcf.pl | 1.20 KB |
| vsHeader.py | 1.04 KB |
| vsSomatic2vcf.py | 967 B |
| wgs_perfsummary.py | 5.14 KB |
