pmc-scripts
Public
Source
| Source | Size | ||
|---|---|---|---|
| R_libs/gridss | |||
| sig_plot | |||
| addbamstats.pl | 15.11 KB | ||
| addbamstats_ori.pl | 14.84 KB | ||
| addRepeatMasker.py | 2.07 KB | ||
| addSampleIDtoHeader.py | 448 B | ||
| AppendTranscriptIndex.pl | 3.62 KB | ||
| merge_vcf_vep.pl | 14.07 KB | ||
| mp-vep-78.sh | 2.37 KB | ||
| mp-vep-parallel.py | 5.05 KB | ||
| mp-vep.sh | 1.51 KB | ||
| mp_contra_column.sh | 455 B | ||
| Performance.pm | 21.32 KB | ||
| PerformanceHalo.pm | 21.11 KB | ||
| PerformanceSummary.pl | 1.12 KB | ||
| PerformanceSummary_HALO.pl | 1.13 KB | ||
| process-GRIDSS-output-single.R | 3.66 KB | ||
| process-GRIDSS-output.R | 3.55 KB | ||
| removeDuplicates.py | 11.65 KB | ||
| rna-diff_splicing.R | 3.57 KB | ||
| rna-seqc-summary.R | 491 B | ||
| rna-seqc-summary.sh | 240 B | ||
| Run_deconstructSig.R | 1.36 KB | ||
| run_removeDup.sh | 403 B | ||
| sig_plot.R | 1.32 KB | ||
| snp_signature.sh | 1.09 KB | ||
| SortSam.sh | 71 B | ||
| Util.pm | 1.80 KB | ||
| variant_effect_predictor.pl | 103.59 KB | ||
| variant_effect_predictor_v73.pl | 113.55 KB | ||
| vcfExtractDP_AD.py | 5.39 KB | ||
| vcfGetAverageDP_AD.py | 3.23 KB | ||
| vcfReduceFormatInfo.py | 2.02 KB | ||
| vsHeader.py | 1.04 KB | ||
| vsSomatic2vcf.py | 967 B | ||
| wgs_perfsummary.py | 5.14 KB | ||