Tumour Evolution Simulation
  1. Tumour Evolution Simulation

simulation-devel

Public
AuthorCommitMessageCommit dateIssues
Yoshua WakehamYoshua Wakeham
eba3978f68eBug fix for matplotlib backend issue
Yoshua WakehamYoshua Wakeham
4a2c0043e15Ensure run_simulation exports correct PYTHONPATH when on cluster
Yoshua WakehamYoshua Wakeham
138d5bf1248Specify python2.7 in run_simulation.sh
yoshwyoshw
791bf2bf166Begin cleaning up style errors etc.in population.py
yoshwyoshw
330145be03fUpdate parameter files
yoshwyoshw
eebc940d779Continue moving .dat files to .csv
yoshwyoshw
8155584507fBegin converting .dat files to .csv where appropriate
yoshwyoshw
3e6dde0ab15Small fixes
yoshwyoshw
6de53d638edSet default initial size to 25
yoshwyoshw
71ff0fb66bdImprove parameter validation
yoshwyoshw
77ebb770e18Rename parameter 'loops' to 'max_cycles' for clarity
yoshwyoshw
73eb5b6e8d2Remove old test folders
yoshwyoshw
8ec3438b08aRename test folders to be more descriptive
yoshwyoshw
4210abd5641Write results to .csv rather than .dat file
yoshwyoshw
73665678505Clean up bad var names and superfluous echos in run_simulation.sh
yoshwyoshw
8926def396dRename col 'cycles' to 'elapsed_cycles'
yoshwyoshw
6d1dee917d5Create gitignore file
yoshwyoshw
a5d545c00b8Move make_path_unless_exists to utilities
yoshwyoshw
c1070a35d95Add param set and run number to summary output; fix bug in writing to file
yoshwyoshw
ce9bae5060bCreate utilities module and secs_to_hms utility function
yoshwyoshw
c99cb72c1a4Fix bugs in main shell script
yoshwyoshw
d046360ad27Continue work on main simulation shell script
yoshwyoshw
82b5edd01a2Start converting hetg.sh into generic run_sim script
yoshwyoshw
3c2c779886aMeasure elapsed time of sim rather than clock time
yoshwyoshw
c0edd337963Add some docstrings; tidy up trailing whitespace
yoshwyoshw
86eaedb1573Rewrite write_population_summary to match new columns
yoshwyoshw
ddf8057cb70Modify results initialisation to take testname directory as param
yoshwyoshw
b08af4e97f4Use csv library to write header row to results file
yoshwyoshw
f5b1a769e05Remove redundant columns, and rename columns for clarity
yoshwyoshw
6dd40554c58Resolve minor inconsistency in variable name
yoshwyoshw
e299f948478Add __name__ == __main__ test to main.py
yoshwyoshw
666391026e8Add dummy function for initialising results
yoshwyoshw
64df54c5b1dAdd function for creating a directory
yoshwyoshw
e12a4c08b1fAdd list of results file cols to main.py
andrewandrew
a9243eac8deAdded dropdata
AndrewAndrew
bcf4855632eAdded hetg.sh
AndrewAndrew
52a02cf57dfUpdated files for het runs, to autosummarise
AndrewAndrew
7f2da29c6e6Merged in changes from a few branches
AndrewAndrew
1ce00007cf1Added plots
AndrewAndrew
e333516d95fUpdate
AndrewAndrew
175a901489bUpdate readme
AndrewAndrew
ea7feabd65bTitle size
AndrewAndrew
883d95f1b39Adding new files and tests