Andrei Seleznev 85cf1003bc4 debug printlns removed 03 Sept 2019 Andrei Seleznev cdd2e29cf2b Dockerization WIP 29 Aug 2019 Andrei Seleznev af6b3b27738 completed curvar deletion test 26 Aug 2019 Andrei Seleznev c018faad1b8 fixed reviewspec bug 26 Aug 2019 Andrei Seleznev 03cfe49a9df fixed curvariantdeletionspec bug 20 Aug 2019 Andrei Seleznev b4a19b4b998 trim parameters from props file 20 Aug 2019 Andrei Seleznev 8f18e8878c2 added missing deletion spec file 20 Aug 2019 Andrei Seleznev 90ebcf832bd curation spec split into two tests, one for deletion and one for curation 20 Aug 2019 Andrei Seleznev 09f85608f99 fixed typo sythax error 19 Aug 2019 Andrei Seleznev a4682bad6f7 debug printlns for a dev run 12 Aug 2019 Andrei Seleznev 30295cfb11f WIP a curationSpec that deletes a curvariant after curation 06 Aug 2019 Andrei Seleznev e95e813ef33 fixed headless check in reportspec so headless browsers do not rest report dl 06 Aug 2019 Andrei Seleznev ac453d9a035 took out no longer neccessary headless scrolls from curate spec svlistpage 06 Aug 2019 Andrei Seleznev 0009df55f6a gebconfig now explicitly maximise headless browser window 06 Aug 2019 Andrei Seleznev 61092dbadf0 genemask test fixes 05 Aug 2019 Andrei Seleznev e8b56a46144 fixed curaitonspec to work on headless browser by forcing a jsscroll back from curate target to avoid pagination div getting in the way 05 Aug 2019 Andrei Seleznev 59314f8571e reportspec added a message for assert 05 Aug 2019 Andrei Seleznev 55e4339bdf3 long wait timeouts for curate a variant action 30 July 2019 Andrei Seleznev 5bd6deb11f3 fixed svlistpage checkbox checking bug. user can now pass hgvsg=auto to CurationSpec to curate the first found uncurated variant 30 July 2019 Andrei Seleznev a369d9527ed minor bugfixes. assert user has correct role for certain tasks. 30 July 2019 Andrei Seleznev 34524d2ae85 test args rewritten: we can now supply spec-specific sample seqerun and hgvsg parameters. asserts now have explanations. no more Ignore headers on tests for missing args, but asserts with meaningful messages instead. 29 July 2019 Andrei Seleznev 7d4a9058d6b cleanup typos etc 16 July 2019 Andrei Seleznev 0ae3f119ffd bugfix genemask change test, code cleanup 16 July 2019 Andrei Seleznev 158bdd8ae70 added curation test, which curates a given variant. small cleanup and bugfix for genemask check 15 July 2019 Andrei Seleznev f6a405a8461 added search test, which searches for seqrun and finds sample in result 10 July 2019 Andrei Seleznev 3c523c51da9 gene mask test will now unreview a reviewed sample before changing gene mask 10 July 2019 Andrei Seleznev 99151d84f42 review code for svlist. reviewspec test written and passes 10 July 2019 Andrei Seleznev f03afe62bcf small genemask change, new file for reviewtest 09 July 2019 Andrei Seleznev a621d3ce562 cleanup and slight refactor 09 July 2019 Andrei Seleznev e5dd41c2a3f added gene maks test that tests 'unmask everything' 09 July 2019 Andrei Seleznev ecd14325305 added functionality to make sure gene mask test actually changes gene mask even if same mask provided 09 July 2019 Andrei Seleznev b6ed7b4396b report test cleanup 09 July 2019 Andrei Seleznev 9747aa8d313 test for downloading report finished, but disabled for Headless browsers as js report dl doesnt work headless. added parameter for file download dir for tests 09 July 2019 Andrei Seleznev 079870acc89 gitignore 09 July 2019 Andrei Seleznev bf12beaaf51 started on report download test 02 July 2019 Andrei Seleznev 91977a697d8 muthur tests now change baseUrl if provided in args 02 July 2019 Andrei Seleznev 397e52c898c increased geb wait timeout to 20s 01 July 2019 Andrei Seleznev b30c06bb751 M Merge branch 'master' into muthur-andrei-groovy with strategy Ours to replace old master grails muthur with groovy-only muthur 01 July 2019 Andrei Seleznev 05c3b93c96a fix gene mask out of order check and refactor 25 June 2019 Andrei Seleznev 2bc76b656a7 slight refactor 25 June 2019 Andrei Seleznev 3b9c2114d63 change gene mask test now checks svlist. we can now pass a .properties file instead of passing all arguments individually to muthur 25 June 2019 Andrei Seleznev 445d91b75d5 WIP on parsing and checking svlist variant grid 24 June 2019 Andrei Seleznev 2f56fca7065 change gene maks test fixed - fixed table module 24 June 2019 Andrei Seleznev 8e56477274e timeout for change gene mask rerun increased to 40min 18 June 2019 Andrei Seleznev 5c751e6df61 cleanup and fixup of gene mask test. now waits for 20min for sample rerun to complete. 18 June 2019 Andrei Seleznev 9ae4f4247ec basic change gene mask test passing 18 June 2019 Andrei Seleznev 65f6e15e302 WIP gene mask test, modules for splash table set 18 June 2019 Andrei Seleznev e0ab37e927e WIP geb test for gene mask 17 June 2019 Andrei Seleznev ba51888ac8d WIP gene mask test 17 June 2019 Andrei Seleznev 3b073183cd1 WIP on gene mask test 17 June 2019 
Andrei Seleznev